Whole Genome Data

BAM files are available to all investigators through completion of Data Access Procedures process in the St. Jude Cloud.

Additional access to phenotype data available through collaboration with CCSS by submitting an Application of Intent to develop a study.

Public Access Whole Genome Data Tables

The table below provides characteristics for genome sequenced CCSS participants.

Characteristic CCSS Participants with Genotype Data (N=2999)
N %
Sex
Male 1433 48.2
Female 1567 51.8
Race
White, NH 2151 69.1
Black, NH 98 2.9
Hispanic/Latine 143 4.6
Other 608 23.4
Primary Cancer Diagnosis
Acute lymphoblastic leumeia 518 36.6
Acute myeloid leukemia 92 2.3
Other leukemia 59 1.5
Astrocytoma 445 11.4
Medulloblastoma, PNET 190 4.9
Other CNS tumor 121 3.1
Hodgkins disease 351 9.0
Non-Hodgkins lymphoma 286 7.3
Kidney tumor 291 7.4
Neuroblastoma 239 6.1
Soft tissue sarcoma 150 3.8
Ewongs sarcoma 97 2.5
Osteosarcoma 141 3.6
Other bone tumor 20 0.5
Age at Cancer Diagnosis
0-4 1054 40.6
5-9 726 26.6
10-14 730 19.9
15-21 490 12.9
Years of Diagnosis
1987-1989 660 22.4
1990-1994 1194 40.5
1995-1999 1146 37.1
Radiotherapy for Primary Cancer
Yes 1164 35.1
No 1723 64.9
Chemotherapy for Primary Cancer
Yes 2349 85.7
No 542 14.3